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code to calculate dice score
“code to calculate dice score” Code Answer
code to calculate dice score
python by
Embarrassed Emu
on May 07 2020
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import numpy as np np.random.seed(0) true = np.random.rand(10, 5, 5, 4)>0.5 pred = np.random.rand(10, 5, 5, 4)>0.5 def single_dice_coef(y_true, y_pred_bin): # shape of y_true and y_pred_bin: (height, width) intersection = np.sum(y_true * y_pred_bin) if (np.sum(y_true)==0) and (np.sum(y_pred_bin)==0): return 1 return (2*intersection) / (np.sum(y_true) + np.sum(y_pred_bin)) def mean_dice_coef(y_true, y_pred_bin): # shape of y_true and y_pred_bin: (n_samples, height, width, n_channels) batch_size = y_true.shape[0] channel_num = y_true.shape[-1] mean_dice_channel = 0. for i in range(batch_size): for j in range(channel_num): channel_dice = single_dice_coef(y_true[i, :, :, j], y_pred_bin[i, :, :, j]) mean_dice_channel += channel_dice/(channel_num*batch_size) return mean_dice_channel def dice_coef2(y_true, y_pred): y_true_f = y_true.flatten() y_pred_f = y_pred.flatten() union = np.sum(y_true_f) + np.sum(y_pred_f) if union==0: return 1 intersection = np.sum(y_true_f * y_pred_f) return 2. * intersection / union print(mean_dice_coef(true, pred)) print(dice_coef2(true, pred)) # 0.4884357140842496 # 0.499001996007984
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